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genetic nets (Topic)

Genetic `nets', or networks- that form a living organism's genome -are mathematical models of functional genes linked via their non-linear, dynamic interactions. The simpler, Boolean, or two-state models of genomes form a proper subcategory of the category of n-state genetic networks, $ \textbf{GN}_{\L{}M_n}$ that operate on the basis of a Łukasiewicz-Moisil n-valued logic algebra $ LM_n$. Then, the category of genetic networks, $ \textbf{GN}_{\L{}M_n}$ was shown in ref. [2] to form a subcategory of the algebraic category of Łukasiewicz algebras, $ \mathcal{LM}$ [1,2]. Furthermore, the category of automata (or sequential machines based on Chrysippean or Boolean logic) and the category of $ (M,R)$-systems (that can be realized as concrete metabolic-repair biosystems of enzymes, genes, and so on) are subcategories of $ \textbf{GN}_{\L{}M_n}$. The latter corresponds to organismic sets of zero-th order in the simpler, Rashevsky's theory of organismic sets.

Bibliography

1
Baianu, I.C. (1977). A Logical Model of Genetic Activities in Łukasiewicz Algebras: The Non-linear Theory., Bulletin of Mathematical Biology, 39:249-258.
2
Baianu, I.C., Brown, R., Georgescu, G., Glazebrook, J.F. (2006). Complex nonlinear biodynamics in categories, higher dimensional algebra and Łukasiewicz-Moisil topos: transformations of neuronal, genetic and neoplastic networks. Axiomathes 16(1-2):65-122.
3
Baianu, I.C., J. Glazebrook, G. Georgescu and R.Brown. (2008). A Novel Approach to Complex Systems Biology based on Categories, Higher Dimensional Algebra and Łukasiewicz Topos. Manuscript in preparation, 16 pp.
4
Georgescu, G. and C. Vraciu (1970). On the Characterization of Łukasiewicz Algebras., J. Algebra, 16 (4), 486-495.



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See Also: algebraic category of $LM_n$-logic algebras, organismic sets, organismic sets, Jan \L{}ukasiewicz, categories and supercategories in relational biology, molecular set theory, category theory, organismic set theory

Other names:  genome network, genome, entity of all interacting genes in a living organism
Also defines:  genetic net, genetic network, category of genetic nets
Keywords:  category of genetic networks, algebraic category of Lukasiewicz algebras, Lukasiewicz-Moisil generalized topos
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Cross-references: theory, order, organismic sets, logic, sequential machines, category of automata, basis, category, subcategory, Boolean, functional
There are 13 references to this entry.

This is version 34 of genetic nets, born on 2008-07-10, modified 2008-09-07.
Object id is 10767, canonical name is GeneticNetsOrNetworks.
Accessed 702 times total.

Classification:
AMS MSC92B05 (Biology and other natural sciences :: Mathematical biology in general :: General biology and biomathematics)
 92B20 (Biology and other natural sciences :: Mathematical biology in general :: Neural networks, artificial life and related topics)
 03B50 (Mathematical logic and foundations :: General logic :: Many-valued logic)
 92D15 (Biology and other natural sciences :: Genetics and population dynamics :: Problems related to evolution)
 55U99 (Algebraic topology :: Applied homological algebra and category theory :: Miscellaneous)

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